CAST gene effect on body condition score and some ultrasonographic measurements in Karacabey Merino sheep

1. Isolation of CAST gene.
2. Body weightand body conditionscore (BCS) were determined.
3. Lumbar eye muscle depth (Musculus longissimus thoracis et lumborum-MLD) and backfat thickness (BFT) were determined by ultrasonic measurements.
4. It was determined that the CAST gene has a significanteffect on liveweight, body condition score (BCS), lumbar eye muscle (MLD) dept hand backfat thickness (BFT) in Karacabey Merinosheep.

Introduction

Lamb meat is highly ranked among red meats in Turkey. Sheep breeding, essential in animal husbandry, produces raw materials for the textile and dairy sector and provides valuable lamb meat. Due to the interest in the consumption of lamb meat, its excellent culinary value, and its ability to adapt to growing in different climatic and geographical conditions, fattening sheep and sheep meat production has always been the focus of attention in animal production and continues to increase worldwide. With this interest in sheep breeding and the development of animal breeding and feeding techniques, significant progress has been made regarding rapid live weight gain and productivity in livestock (1-4). For this purpose, Karacabey Merino was developed by crossing with German meat Fleece Merino×Kıvırcık to increase wool and meat performance (5). However, at this point, contrary to the increase in yield, it should be noted that meat quality decreases. The live weight gain, fattening performance, and the meat quality obtained from the animals should be considered (6). Consistently better quality of lamb meat should be the industry's top priority. Therefore, a recent shift in livestock appears to be from increased muscle growth to improved meat quality. The influence of breed and genotype on the quality and composition of meat is known. This revealed the importance of choosing the right breed with high meat quality (7). Meat tenderness, water-holding capacity, meat colour, chemical structure, nutritional value, and pH are important criteria in determining meat quality. Meat quality is also affected by environmental factors such as age, gender, ration content before slaughter, carcass temperature after slaughter, pH change, maturation, and applied technological processes (8-11). It is a complex system regulated by many genes on body weight gain and carcass quality. The calpain-calpastatin system is a complex system that is effective in skeletal muscle formation and growth, as well as in meat formation and quality after slaughter (12,13). While calpain is effective in the breakdown of muscle proteins, calpastatin is a calpain-protease inhibitor. Increased calpastatin activity causes a decrease in calpain activity. High calpastatin activates skeletal muscle formation and growth (1,14-20). At the same time, it is effective in determining the birth weight and daily live weight gain of lambs (4,21). It is effective in meat formation, maturation and tenderness post-slaughter (4,13,21). Calpastatin (CAST) is a gene that affects meat quality such as Musculus longissimus dorsi (MLD-low back muscle) area, marbleization degree, fat ratio and back fat thickness, carcass weight and carcass yield, water holding capacity of meat, tenderness (2,21-23). The CAST gene is the candidate gene that is thought to be effective on growth and carcass characteristics on the fifth chromosome in sheep (24-26). Body condition score (BCS) is a subjective measure of fattening performance in live animals. However, it is closely related to body composition and is a simple, functional and helpful indicator (27). Studies have shown a linear relationship between BCS and live weight gain. On the other hand, there is a linear relationship between BCS and MLD area expansion and back fat thickness. As a matter of fact, while determining the BCS, the back of the sheep is scored by controlling the MLD muscle width (28,29). Using ultrasound, carcass structure and quality can be determined in live animals. Although ultrasound technology is widely used for reproduction measurements, MLD can measure muscle depth and back fat thickness. In this way, carcass quality can be determined quickly and economically without harming the animal (30-34).

This study investigated the effect of the CAST gene on body weight, body condition score (BCS) and some ultrasonic measurements (backfat thickness and MLD muscle depth) in the Musculus Longissimus dorsi-MLD.

Materials and Methods

Ethical Statement

The study was conducted with the permission of the Balikesir University Animal Experiments Local Ethics Committee dated 25.04.2024 and numbered 2024/4-12.

Animal material

The study's animal material consisted of 200 Karacabey Merino lambs, including 24 males and 30 females aged 6 months, 15 males and 20 females aged 8 months, and 11 males and 100 females aged 12 months. Separate groups have been created for each age. Sheep are fed ad libitum roughage and additionally concentrated feed in amounts calculated according to age.

Blood samples collection

Blood samples were collected from the jugular vein, and 10 ml of each was filled into a sterile vacuum tube containing K3-EDTA in a controlled manner. The tube was stored at -20 °C until use.

DNA isolation from blood samples

The DNA isolation was performed at Adnan Menderes University, Faculty of Agriculture, Department of Animal Science, Genetics Laboratory, Aydın.DNA required for the study was isolated from blood samples using a commercial isolation kit (Applied Biological Materials Column-Pure Blood Genomic DNA Kit, Canada). The quantity and quality of DNA samples obtained from the isolation were checked with NanoDrop 2000 (Thermo Scientific, USA).

DNA Amplification by PCR

Genotypes for theCAST gene were determined by PCR-RFLP method using the primer pair reported by Khederzadeh (2011) (CAST F: 5'-CCTTGTCATCAGACTTCACC-3', CAST R: 5'-ACT GAG CTT TTA AAG CCT CT-3'). For the Polymerase Chain Reaction with a total volume of 25 µl, a PCR mixture containing dNTP (0.2mM), MgCl2 (2.0mM), primers (0.25 µM), PCR buffer (1X) and Taq DNA polymerase and 100 ng Genomic DNA and ddH₂O was created. The PCR program used in the thermal converter to amplify primer-specific DNA regions is given in table 1. MspI enzyme was used to cut the amplified PCR products. Enzyme digestion was performed at 37°C for 6 hours and in a 30 µL reaction solution containing 0.50 µL of ddH2O, 3.00 µl of 10X Buffer Tango, 1.50 µLMspI and 25 µL of PCR product. Genotypes were determined by separating and visualizing the cut DNA fragments on a 2% agarose gel.

Table 1: PCR program used in thermal cycler

Determination of live weight and body condition score

Live weights were determined using an electronic scale (Uzay Baskül- UZE-P 300) with a 50 g sensitivity. Body condition score was scored from 1 to 5 (1: Emaciated, 2: Thin, 3: Average, 4: Fat, 5: Obese) (35). It was carried out immediately after the live weight control.

Ultrasonic measurements

Shearing removed The wool from the measurement areas to improve ultrasound image acquisition. Measurements of the characteristics of the MLD were performed with an ultrasound device (SIUI CTS900V) using a linear probe (8-Mhz) with a scanning area of ​​6 cm in the region between the 12th and 13th ribs. In addition, liquid ultrasound gel was applied to the scanning area to improve the transmission between the skin and the transducer. In the measurements, the BFT and MD of the MLD muscle were determined as ultrasound criteria (Figure 1).

Figure 1: Measured properties a- Muscle Depth ( MD), b-Backfat Thickness (BFT)

Statistical analysis

Allele frequencies, genotype frequencies and chi-square (χ2) tests were obtained using GenAlEx (36,37) and Popgene32 (38) programs. The GLM procedure of the SAS (39) package statistics program was used for variance analysis to determine the change in body weight, body condition score and ultrasonic measurement data according to CAST genotypes. DUNCAN was used for the multiple comparison tests (39).

Results

A statistically significant difference (P<0.05) between age groups regarding BFT values ​​among ultrasound criteria was found. There was no statistically significant difference in MD between age groups. It was determined that there was a statistically highly significant difference (P<0.01) between age groups in terms of BCS and live LW values. It was found that there was a statistically significant difference between genders in terms of MD (P<0.05), BFT (P<0.01), BCS and LW values. Genotypes were found to have a highlysignificant effect on MD and BFT (P<0.01). It was determined that there was a statistically significant difference (P<0.05) between genotypes in terms of BCS values. There was no statistically significant difference between genotypes in terms of LW values. LW had a significant effect on ultrasound measurement parameters and BCS. Table 2 gives the mean and standard errors of least squares obtained for live weight, ultrasound measurements, and body condition scores of lambs in different age groups.

Table 2: Least squares meanand standard errors (SE) for body weight, ultrasound measurements, and body condition score

MD: Muscle depth, BFT: backfat thickness, BCS:Body Condition score, LW: Live weight

DNA bands formed due to PCR-RFLP were visualized by separating them in 2% agarose gel (Figure 2). For the separation of the M and N alleles of the Calpastatin gene, the 565 bp long PCR product amplified with the primer pairs was cut with restriction enzyme (MspI). Due to a single point mutation occurring in the cut region of the enzyme, this cut region has disappeared in some individuals, and no cuts have been made. Therefore, only a single band with a length of 565 base pairs was observed in individuals exhibiting this condition, and these individuals were genotyped as NN. Individuals showing three bands of 565, 306 and 259 base pairs were genotyped as MN, while individuals with two bands with a length of 306 and 259 base pairs were genotyped as MM due to a mutation in only one of the alleles.

Figure 2: Genotyping of the CAST gene by Restriction Fragment Length Polymorphism (PCR-RFLP) method.

Table 3 gives allele frequencies, genotype frequencies, observed (Ho) and expected heterozygosity (He) values obtained from the study, and chi-square test results for Hardy-Weinberg equilibrium. The frequency of M and N alleles in Karacabey Merino sheep was 67.50% and 32.50%, respectively. Accordingly, it showed that the M allele is more common in populations than the N allele. Considering the genotype frequencies, all three MM, MN and NN genotypes were observed in the Karacabey Merino breed. MM, MN and NN genotype frequencies were found as 47.50%, 40.00% and 12.5%, respectively. The genotype frequency of MM genotypes was found to be relatively higher than the others (47.50%). Observed heterozygosity (Ho) and expected heterozygosity (He) values of the CAST gene were found to be 0.400 and 0.439, respectively. It was also observed that the population analyzed for this gene was not in Hardy-Weinberg equilibrium.

Table 3: Allele, genotype frequencies observed (Ho) and expected (He) heterozygosity in terms of CAST gene in Karacabey Merino lambs, Chi-square test (χ2)

ns:nonsignificant

Discussion

Determining BCS is easy and practical for monitoring fattening performance. Lagonikou et al. stated that BCS could be considered an alternative in their study on estimating carcass characteristics with ultrasound measurements. However, they stated that the evaluators experience and performance in determining the correct score should be addressed when determining BCS (34). It was determined that there was a statistically significant difference between the genotypes in terms of BCS values. As in the ultrasound measurements, it was observed that lambs with MM and MN genotypes showed better performance in terms of BCS, while those with NN genotypes showed poor performance. Therefore, the CAST gene significantly affects BCS.

It is observed that ultrasound measurements (MD and BFT) and BCS decrease with age. This can be attributed to the fact that the performance of 6-month-old lambs was better because they suckled milk and were also given additional feed, while the 8-and 12-month-old lambs were only fed adlibitum. Considering the genders, as expected, ultrasound measurements (MD and BFT), BCS, and LW showed higher performance in male lambs than females. These results are consistent with literature data (31-33).

Calpastatin is one of the genes on which studies are intense. It is seen that these studies focused on the effects of the calpastatin gene on MLD muscle depth, backfat thickness criteria determined by ultrasonic measurements, and phenotypic features such as live weight, live weight gain, age, weaning age and weight. When the literature is reviewed, it is stated that the CAST gene is more common in the population than the N allele of the M allele. In some populations, the frequency of the N allele is low; even populations that do not have the N allele have been reported. Dimitrova et al. In his study on Bulgarian sheep, the N allele was not found in Cooper-Red Shumen sheep (20). The allele N was not found in a study on Lacaune and Eastern Frisian breeds (21,40). While the N allele frequency in the three regions varied between 0.07% and 0.11%, the N allele was not found in the fourth region (3). Avanus found the highest M allele frequency in some Turkish native sheep breeds in İmroz 96%, and the lowest N allele frequency in Kıvırcık sheep breeds (41). In Karacabey Merino lambs, the allele frequency was determined as M 67.5% and N 32.5%. Asadi et al. show parallelism with M 63.8% and N 36.2% allele frequencies in Lori sheep (42). Yılmaz et al. found the allele frequency of Karacabey Merino as M 80.04% and N 19.96% in their study (40).

MM, MN and NN genotypes of the Karacabey Merino CAST gene were observed. Genotype frequencies were determined as 47.50%, 40.00% and 12.50%, respectively. Szkudlarek-Kowalczyk et al. determined the genotype frequencies in Polish Merino sheep as 56.10%, 40.10% and 3.70%, respectively (43). In particular, the MN genotype appears to be the same. The genotype frequency of Lory sheep is 40.70%, 46.20% and 13.10%, respectively (31). Ata and Cemal found the genotype frequency in Karya sheep to be 56.30%, 38.8% and 6.90%, respectively (44). Yılmaz et al. found the Karacabey Merino genotype frequencies to be 66.94, 26.21 and 6.85%, respectively (31). Avanus, the highest genotype frequencies were determined in MN Kıvırcık 60%, MM İmroz 92.6% and NN Morkaraman 7.1% sheep breeds. However, the NN genotype was not found in Kıvırcık, İmroz, Karayaka and Karagül breeds (41). Studies have reported that sheep with the M allele of the CAST gene show higher performance than those with the N allele, and MM and MN genotypes show higher performance than NN genotypes. It is seen that the Karacabey Merino M allele 67.50% is high. Although MM 47.50% and MN 40.00% genotype frequencies are relatively low, considering that both genotypes are associated with high yields, it can be said that they are high overall in terms of genotype frequencies.

Genotypes also appear to have a significant impact on ultrasound measurements. It is observed that lambs with MM and MN genotypes perform better regarding muscle depth and backfat thickness (BFT). Those with the NN genotype showed poor performance. In parallel with the literature, selection is in the direction of MM and MN genotypes. Valencia et al. reported in their study that the CAST gene significantly affects birth weight in lambs, but it does not show a significant difference in MD and BFT (16). In their study on Kıvırcık lambs, Yılmaz et al. investigated the effects of the CAST gene, which is important for meat quality, on weaning weight, average daily gain and MLD traits. They reported that CAST alleles particularly affect BFT and S+BFT and have fewer fat carcasses than lambs with the NN genotype (30). Cemal et al. reported in their study on genetic prediction from genetic parameters related to ultrasound measurements in Kıvırcık lambs that BFT, S+BFT and MD are significantly affected, while LW is less affected. They stated that BFT and Skin+BFT can be used as selection criteria (33). The effect of other genes affecting meat yield and carcass quality on BCS and ultrasonic measurements should be investigated. This will contribute significantly to genomic selection studies.

Conclusion

With live weight, BCS, and ultrasonic measurements, it is possible to determine lambs' fattening performance and meat quality without slaughtering them at any age. The study shows that the CAST gene significantly affects body weight, BCS, and some ultrasonic measurements.

Acknowledgments

I would like to thank the Adnan Menderes University Agricultural Biotechnology and Food Safety Application and Research Center (ADUTARBİYOMER) for providing laboratory facilities for molecular genetic analysis and Assoc. Prof. Dr.Onur YILMAZ performed the statistical analysis.

Conflicts of interest

The authors declare no conflicts of interest.