[1]. Tripathi, M. K., Tiwari, S., Tripathi, N., Tiwari, G., Bhatt, D., Vibhute, M., ... Tiwari, S. (2021). Plant tissue culture techniques for conservation of biodiversity of some plants appropriate propagation in degraded and temperate areas. Current Topics in Agricultural Sciences, 4, 30–60.
[2]. Sharma, A., Pandey, H., Nampoothiri Devadas, V. A. S., Kartha, B. D., & Jha, R. (2023). Production of, factors affecting, gene regulations, and challenges in tissue cultured plant through soilless culture. Journal of Agricultural and Food Chemistry, 71(14), 5804–5811.
[3]. Halder, M., Majumder, A., Ray, S., & Jha, S. (2021). Medicinal plant research at crossroads: biotechnological approaches for conservation, production and stability in tissue cultures and regenerated plants. In Medicinal Plants: Domestication, Biotechnology and Regional Importance (pp. 459–544).
[4]. Morinaka, H., Coleman, D., Sugimoto, K., & Iwase, A. (2023). Molecular mechanisms of plant regeneration from differentiated cells: Approaches from historical tissue culture systems. Plant and Cell Physiology, 64(3), 297–304. https://doi.org/10.1093/pcp/pcac172
[5]. Ling, Y., Wang, D., Peng, Y., Peng, D., & Li, Z. (2025). Cross-stressful adaptation to drought and high salinity is related to variable antioxidant defense, proline metabolism, and dehydrin b expression in white clover. Agronomy, 15(1), 126.
[6]. Tirtawijaya, G., Negara, B. F. S. P., Lee, J. H., Cho, M. G., Kim, H. K., Choi, Y. S., ... Choi, J. S. (2022). The influence of abiotic factors on the induction of seaweed callus. Journal of Marine Science and Engineering, 10(4), 513.
[7]. Bravo-Vázquez, L. A., Angulo‑Bejarano, P. I., Bandyopadhyay, A., Sharma, A., & Paul, S. (2023). Regulatory roles of noncoding RNAs in callus induction and plant cell dedifferentiation. Plant Cell Reports, 42(4), 689–705.
[8]. Zaman, M. A. K., Azzeme, A. M., Ramle, I. K., Normanshah, N., Shaharuddin, N. A., Ahmad, S., & Abdullah, S. N. A. (2021). Prolonged incubation of callus on auxin herbicide 2,4-D displayed significant effect on alkaloid production in callus of the woody medicinal plant Polyalthia bullata. In Vitro Cellular & Developmental Biology - Plant, 57(5), 749–759.
[9]. Brandão, A. S., Borbinha, J., Pereira, T., Brito, P. H., Lourenço, R., Bensimon-Brito, A., & Jacinto, A. (2022). A regeneration-triggered metabolic adaptation is necessary for cell identity transitions and cell cycle re-entry to support blastema formation and bone regeneration. Elife, 11, e76987. https://doi.org/10.7554/eLife.76987
[10]. Mustafina, F. U., Kizi Jamalova, D. N., Zarekarizi, A. R., Kizi Juraeva, H. K., Ogli Khazratov, A. T., Hoe Jin, K., ... Lim, J. T. (2025). Optimized microclonal propagation protocol and antioxidant activity of callus cultures from the endangered Ferula tadshikorum Pimenov (Apiaceae Lindl.). Plant Cell, Tissue and Organ Culture, 161(2), 51.
[11]. Arain, S., Kaloi, G. M., Ahmad, S., Rajput, M. A., Mari, A. H., Al-Qahtani, W. H., … Abro, A. A. (2024). The effect of dichlorophenoxyacetic acid (2,4-D) concentrations on callus induction in sugarcane (Saccharum officinarum). Applied Ecology and Environmental Research, 22(5), 4951–4960. https://doi.org/10.15666/aeer/2205_49514960
[12]. Thakur, P., Kumari, N., Kumar, A., Sharma, P., & Chadha, S. (2024). Recent advances in development and utilization of double haploids (DHs) in economically important vegetable crops. Plant Cell, Tissue and Organ Culture, 156(1), 15.
[13]. Ramakrishnan, M., Zhou, M., Ceasar, S. A., Ali, D. J., Maharajan, T., Vinod, K. K., ... Wei, Q. (2023). Epigenetic modifications and miRNAs determine the transition of somatic cells into somatic embryos. Plant Cell Reports, 42(12), 1845–1873.
[14]. Su, W., Xu, M., Radani, Y., & Yang, L. (2023). Technological development and application of plant genetic transformation. International Journal of Molecular Sciences, 24(13), 10646. https://doi.org/10.3390/ijms241310646
[15]. Sabagh, A. E., Mbarki, S., Hossain, A., Iqbal, M. A., Islam, M. S., Raza, A., ... Farooq, M. (2021). Potential role of plant growth regulators in administering crucial processes against abiotic stresses. Frontiers in Agronomy, 3, 648694.
[16]. Owais, M., Mohammed, D. A., Mhammad, H. A., Al Sulivany, B. S., Dernekbaşı, S., & Fazal, R. M. (2025). The role of silica nanoparticles in modulating growth performance, enzyme activity, and heavy metal accumulation in muscle tissue of common carp (Cyprinus carpio L.). Science Journal of University of Zakho, 13(2), 197–205.
[17]. Kosakivska, I. V., Vedenicheva, N. P., Babenko, L. M., Voytenko, L. V., Romanenko, K. O., & Vasyuk, V. A. (2022). Exogenous phytohormones in the regulation of growth and development of cereals under abiotic stresses. Molecular Biology Reports, 49(1), 617–628. https://doi.org/10.1007/s11033-021-06802-2
[18]. Hussain, T., Metwally, E., Murtaza, G., Kalhoro, D. H., Chughtai, M. I., Tan, B., ... Kalhoro, M. S. (2024). Redox mechanisms of environmental toxicants on male reproductive function. Frontiers in Cell and Developmental Biology, 12, 1333845.
[19]. Yousefi, M., Adineh, H., Al Sulivany, B. S., Gholamalipour Alamdari, E., Yilmaz, S., Mahboub, H. H., & Hoseini, S. M. (2025). The potential of the inclusion of Prosopis farcta extract in the diet on the growth performance, immunity, digestive enzyme activity, and oxidative status of the common carp, Cyprinus carpio, in response to ammonia stress. Animals, 15(6), 895.
[20]. Kesawat, M. S., Satheesh, N., Kherawat, B. S., Kumar, A., Kim, H. U., Chung, S. M., & Kumar, M. (2023). Regulation of reactive oxygen species during salt stress in plants and their crosstalk with other signaling molecules—Current perspectives and future directions. Plants, 12(4), 864.
[21]. Kumar, K., Debnath, P., Singh, S., & Kumar, N. (2023). An overview of plant phenolics and their involvement in abiotic stress tolerance. Stresses, 3(3), 570–585.
[22]. Zafari, S., Sharifi, M., Chashmi, N. A., & Mur, L. A. (2016). Modulation of Pb-induced stress in Prosopis shoots through an interconnected network of signaling molecules, phenolic compounds and amino acids. Plant Physiology and Biochemistry, 99, 11–20.
[23]. Raza, A., Hussain, S., Javed, R., Hafeez, M. B., & Hasanuzzaman, M. (2021). Antioxidant defense systems and remediation of metal toxicity in plants. In Approaches to the remediation of inorganic pollutants (pp. 91–124). Springer Singapore.
[24]. Olivares-García, C. A., Mata-Rosas, M., Peña-Montes, C., Quiroz-Figueroa, F., Segura-Cabrera, A., Shannon, L. M., ... Ruiz-May, E. (2020). Phenylpropanoids are connected to cell wall fortification and stress tolerance in avocado somatic embryogenesis. International Journal of Molecular Sciences, 21(16), 5679. https://doi.org/10.3390/ijms21165679
[25]. Ahmed, B. S. (2023). Nutritional effects of dietary spirulina (Arthrospira platensis) on morphological performance, hematological profile, biochemical parameters of common carp (Cyprinus carpio L.). Egyptian Journal of Veterinary Sciences, 54(3), 515–524. https://doi.org/10.21608/ejvs.2023.191557.1441
[26]. Abd Rabou, A. F. N., Hamad, W. A., Mousa, R. A., Shafei, A. A., Fayyad, N. A., Radwan, E. S., … Sukker, G. S. (2019). Trees and shrubs existing at the main campus of the Islamic University of Gaza, Gaza Strip, Palestine. International Journal of Latest Transactions in Engineering and Science, 7(1), 1–16.
[27]. Sharma, G., Barney, J. N., Westwood, J. H., & Haak, D. C. (2021). Into the weeds: New insights in plant stress. Trends in Plant Science, 26(10), 1050–1060.
[28]. Basnett, D., Banerjee, M., & Chowdhury, S. K. (2023). A review on medicinal values and pharmacological importance of Moraceae. Plant Science Today, 14719, 1–9. https://doi.org/10.1016/j.crbiot.2023.100134
[29]. Al-Khayri, J. M. (2010). Somatic embryogenesis of date palm (Phoenix dactylifera L.) improved by coconut water. Biotechnology, 9(4), 477–484. https://doi.org/10.3923/biotech.2010.477.484
[30]. Ikeuchi, M., Sugimoto, K., & Iwase, A. (2013). Plant callus: mechanisms of induction and repression. The Plant Cell, 25(9), 3159–3173. https://doi.org/10.1105/tpc.113.116053
[31]. Carra, A., Wijerathna-Yapa, A., Pathirana, R., & Carimi, F. (2024). Development and applications of somatic embryogenesis in grapevine (Vitis spp.). Plants, 13(22), 3131.
[32]. Karami, O., & Saidi, A. (2010). The molecular basis for stress-induced acquisition of somatic embryogenesis. Molecular Biology Reports, 37(5), 2493–2507.
[33]. Fehér, A. (2019). Callus, dedifferentiation, totipotency, somatic embryogenesis: what these terms mean in the era of molecular plant biology? Frontiers in Plant Science, 10, 536.
[34]. Jiménez, V. M. (2005). Involvement of plant hormones and plant growth regulators on in vitro somatic embryogenesis. Plant Growth Regulation, 47(2), 91–110.
[35]. Pavei, A. F., De Freitas Fraga, H. P., Do Nascimento Vieira, L., & Guerra, M. P. (2018). Effects of glutathione supplementation and carbon source during somatic embryogenesis of Acca sellowiana (O. Berg) Burret (Myrtaceae). Acta Scientiarum. Biological Sciences, 40, 1–8.
[36]. Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical Biochemistry, 72(1-2), 248–254.
[37]. Aebi, H. (1984). Catalase in vivo. Methods in Enzymology. Oxygen Radicals in Biological Systems, 105, 121–126. https://doi.org/10.1016/s0076-6879(84)05016-3
[38]. Adineh, H., Yousefi, M., Al Sulivany, B. S., Ahmadifar, E., Farhangi, M., & Hoseini, S. M. (2024). Effects of dietary yeast, Saccharomyces cerevisiae, and Costmary, Tanacetum balsamita, essential oil on growth performance, digestive enzymes, biochemical parameters, and disease resistance in Nile tilapia, Oreochromis niloticus. Aquaculture Nutrition, 2024(1), Article 1388002.
[39]. Marklund, S., & Marklund, G. (1974). Involvement of the superoxide anion radical in the autoxidation of pyrogallol and a convenient assay for superoxide dismutase. European Journal of Biochemistry, 47(3), 469–474.
[40]. Hasanuzzaman, M., Nahar, K., Gill, S. S., & Fujita, M. (2013). Drought stress responses in plants, oxidative stress, and antioxidant defense. In Climate Change and Plant Abiotic Stress Tolerance (pp. 209–250). https://doi.org/10.1002/9783527675265.ch09
[41]. Zargar, T. B., Mir, A. R., Alam, P., & Hayat, S. (2022). Melatonin alleviates cadmium-induced toxicity by modulating antioxidant defence mechanisms, growth and photosynthesis in Brassica juncea. Russian Journal of Plant Physiology, 69(6), 121.
[42]. Nakano, Y., & Asada, K. (1981). Hydrogen peroxide is scavenged by ascorbate-specific peroxidase in spinach chloroplasts. Plant and Cell Physiology, 22(5), 867–880.
[43]. Velikova, V., Yordanov, I., & Edreva, A. (2000). Oxidative stress and some antioxidant systems in acid rain-treated bean plants: Protective role of exogenous polyamines. Plant Science, 151(1), 59–66. https://doi.org/10.1016/S0168-9452(99)00197-1
[44]. Heath, R. L., & Packer, L. (1968). Photoperoxidation in isolated chloroplasts: I. Kinetics and stoichiometry of fatty acid peroxidation. Archives of Biochemistry and Biophysics, 125(1), 189–198. https://doi.org/10.1016/0003-9861(68)90654-1
[45]. Singleton, V. L., & Rossi, J. A. (1965). Colorimetry of total phenolics with phosphomolybdic-phosphotungstic acid reagents. American Journal of Enology and Viticulture, 16(3), 144–158.
[46]. Bates, L. S., Waldren, R. P. A., & Teare, I. D. (1973). Rapid determination of free proline for water-stress studies. Plant and Soil, 39(1), 205–207.
[47]. Mahood, H. E., Sarropoulou, V., & Tzatzani, T. T. (2022). Effect of explant type (leaf, stem) and 2,4-D concentration on callus induction: Influence of elicitor type (biotic, abiotic), elicitor concentration and elicitation time on biomass growth rate and costunolide biosynthesis in gazania (Gazania rigens) cell suspension cultures. Bioresources and Bioprocessing, 9(1), 100. https://doi.org/10.1186/s40643-022-00588-2
[48]. Garcia, C., Furtado de Almeida, A. A., Costa, M., Britto, D., Correa, F., Mangabeira, P., … Marelli, J. P. (2022). Single-base resolution methylomes of somatic embryogenesis in Theobroma cacao L. reveal epigenome modifications associated with somatic embryo abnormalities. Scientific Reports, 12(1), 15097. https://doi.org/10.1038/s41598-022-18035-9
[49]. Rose, R. J. (2019). Somatic embryogenesis in the Medicago truncatula model: Cellular and molecular mechanisms. Frontiers in Plant Science, 10, 267. https://doi.org/10.3389/fpls.2019.00267
[50]. Dessoky, E. D. S., Attia, A. O., & Mohamed, E. A. M. (2016). An efficient protocol for in vitro propagation of fig (Ficus carica sp.) and evaluation of genetic fidelity using RAPD and ISSR markers. Journal of Applied Biology and Biotechnology, 4, 57–63.
[51]. Rohela, G. K., Jogam, P., Mir, M. Y., Shabnam, A. A., Shukla, P., Abbagani, S., & Kamili, A. N. (2020). Indirect regeneration and genetic fidelity analysis of acclimated plantlets through SCoT and ISSR markers in Morus alba L. cv. Chinese white. Biotechnology Reports, 25, e00417.
[52]. Da Silva, C. C. A., dos Santos Costa, D., Direito¹, I. C. N., & Victório¹, C. P. (2022). Effects of high-dose 2,4-D on germination and initial development of Canavalia ensiformis (L.) DC. Revista Concilium, 22(7). https://doi.org/10.5281/zenodo.15563013
[53]. Al-Zahrani, H. S., Nahar, K., Alharby, H. F., Alsamadany, H., Hakeem, K. R., & Hasanuzzaman, M. (2022). Zinc supplementation enhances glutathione-mediated antioxidant defense and glyoxalase systems to conferring salt tolerance in soybean (Glycine max L.). Agronomy, 12(5), 1032. https://doi.org/10.3390/agronomy12051032
[54]. Lu, H., Wang, M., Li, W., Chen, Z., Li, S., Yi, Z., & Zhang, Y. (2023). Superior antioxidant capacity and auxin production promote seedling formation of rice seeds under submergence stress. Agronomy, 13(1), 171.
[55]. Bielach, A., Hrtyan, M., & Tognetti, V. B. (2017). Plants under stress: involvement of auxin and cytokinin. International Journal of Molecular Sciences, 18(7), 1427.
[56]. Kavi Kishor, P. B., Hima Kumari, P., Sunita, M. S. L., & Sreenivasulu, N. (2015). Role of proline in cell wall synthesis and plant development and its implications in plant ontogeny. Frontiers in Plant Science, 6, 544. https://doi.org/10.3389/fpls.2015.00544
[57]. Martin, A. F., Hapsari, B. W., & Ermayanti, T. M. (2018). Growth and proline accumulation in response to osmotic stress induced by polyethylene glycol treatment in Tacca leontopetaloides cultured in vitro. International Journal of Agricultural Technology, 14(5), 705–716.
[58]. Nieves, N., Sagarra, F., González, R., Lezcano, Y., Cid, M., Blanco, M. A., & Castillo, R. (2008). Effect of exogenous arginine on sugarcane (Saccharum sp.) somatic embryogenesis, free polyamines and the contents of the soluble proteins and proline. Plant Cell, Tissue and Organ Culture, 95(3), 313–320.
[59]. Awada, R., Lepelley, M., Breton, D., Charpagne, A., Campa, C., Berry, V., … Etienne, H. (2023). Global transcriptome profiling reveals differential regulatory, metabolic and hormonal networks during somatic embryogenesis in Coffea arabica. BMC Genomics, 24(1), 41.
[60]. Jin, J., Essemine, J., Duan, J., Xie, Q., Zhu, J., & Cai, W. (2021). Regeneration of active endogenous IAA in rice calli following acclimation to 2,4-D free medium. Plant Growth Regulation, 93(2), 203–220. https://doi.org/10.1007/s10725-020-00679-0
[61]. He, J., Yao, L., Pecoraro, L., Liu, C., Wang, J., Huang, L., & Gao, W. (2023). Cold stress regulates accumulation of flavonoids and terpenoids in plants by phytohormone, transcription process, functional enzyme, and epigenetics. Critical Reviews in Biotechnology, 43(5), 680–697. DOI: 10.1080/07388551.2022.2053056
[62]. Wang, P., Si, H., Li, C., Xu, Z., Guo, H., Jin, S., & Cheng, H. (2025). Plant genetic transformation: Achievements, current status and future prospects. Plant Biotechnology Journal, 23(6), 2034–2058. https://doi.org/10.1111/pbi.70028